Search.setIndex({desctypes:{"0":"attribute","1":"class","2":"method"},terms:{all:[1,3],code:1,partial:3,edg:[1,3],illustr:3,global:1,yellow:3,four:3,influenza:3,abil:1,follow:[1,3],consider:3,hierarch:3,categori:3,seiprp:3,depend:3,sensit:1,graph:1,invas:3,specif:3,environment:3,program:1,becam:1,under:3,aris:3,introduc:3,sourc:[1,3],everi:1,string:1,far:[1,3],daleydjandganijandcanningsc2001:3,wave:3,veri:[1,3],parameter:3,seir:3,parentgraph:1,gui:0,list:1,geograph:[0,3],vector:3,form:3,epipath:1,enjoy:0,smaller:3,neighborhood:3,speci:3,natur:[1,3],direct:[0,3],vaccin:1,design:3,further:3,air:3,append:1,index:0,typolog:3,appear:1,compar:3,neg:3,section:3,introspect:1,brief:3,current:1,kglassandbtgrenfell2004:3,version:3,"new":[1,3],method:1,movement:3,involv:3,full:[1,3],behavior:3,variat:3,gener:3,never:3,getsit:1,confer:3,let:1,path:[1,3],coincid:3,becom:[1,3],sinc:1,valu:[1,3],box:3,search:0,btgrenfellandonbjoernstadandjkappey2001:3,host:3,poisson:3,chang:1,magnitud:3,extra:[1,3],modul:0,ipo:1,put:1,"boolean":1,instal:0,total:[1,3],establish:1,unit:3,from:[1,3],describ:3,distinct:3,wane:3,visit:3,two:3,coverag:1,next:3,few:1,call:[1,3],suppos:3,type:[1,3],commut:3,decis:3,custommodel:1,vname:1,peopl:1,relat:3,notic:1,clue:3,warn:1,flag:1,known:3,hold:3,must:[1,3],account:3,graphic:0,histori:[1,3],remain:3,can:[0,1,3],learn:1,male:3,root:0,could:3,def:1,control:3,quickstart:0,climat:3,give:3,predict:3,indic:[0,1,3],compart:3,spo:1,dengu:3,simul:[0,1,3],inedg:1,risk:3,delai:3,alwai:1,differenti:3,end:1,thing:1,anoth:3,travel:3,write:[0,1],how:1,recoveri:3,pure:0,csv:1,infector:1,updat:1,infecti:[1,3],sir:[1,3],getneighbor:1,after:[1,3],diagram:3,mai:[1,3],data:[0,3],averag:3,"short":3,divid:3,npass:1,correspond:3,element:1,inform:[1,3],maintain:3,environ:[0,1,3],allow:[1,3],order:1,origin:3,outedg:1,help:[1,3],reservoir:3,edge_list:1,notif:3,move:3,becaus:1,through:[1,3],incid:[1,3],endem:3,still:3,vari:3,dynam:[0,1,3],paramet:[1,3],disconnect:1,fit:1,fix:1,platform:1,fig:3,main:[0,3],preval:3,forest:3,them:[1,3],"return":[1,3],fourth:3,thei:3,proce:1,overal:3,miginf:1,dai:1,initi:[1,3],"break":1,framework:[0,3],now:3,lifelong:3,nor:1,introduct:[0,3],inbound:1,term:3,name:1,anyth:1,perspect:1,level:1,easili:3,achiev:3,exampl:[1,3],arrow:3,each:[1,3],found:[1,3],intervent:3,realism:3,mean:[1,3],weight:3,individu:[1,3],continu:[1,3],fever:3,connect:[0,1,3],year:3,beyond:1,sexual:3,event:[1,3],variabl:[1,3],network:[0,1,3],space:3,goe:1,mjkeelingandbtgrenfell1997:3,content:0,adapt:0,ref:3,math:3,diseas:[0,3],site_list:1,insid:1,state:[1,3],given:[1,3],base:3,dictionari:1,textit:3,geocod:1,care:1,totalcas:1,preced:3,veloc:3,exponenti:3,keep:[1,3],recov:3,turn:1,place:[1,3],principl:3,first:1,feed:1,pleas:1,rang:3,directli:3,onc:1,independ:3,number:[1,3],getdistancefromneighbor:1,alreadi:1,done:3,least:[0,1],vaccov:1,size:[1,3],differ:3,script:0,associ:3,interact:3,system:[0,1,3],construct:0,citi:3,necessarili:3,master:0,statement:1,compartment:3,"final":1,store:1,knowledg:1,incub:3,option:1,tool:3,specifi:[0,1],sitenam:1,than:3,symptom:3,character:3,unind:1,pertussi:3,provid:[1,3],remov:3,rate:3,structur:3,cite:3,vocat:0,arrang:3,seri:[1,3],randomli:3,analysi:[0,2,3],sea:3,argument:[1,3],packag:0,have:[1,3],tabl:0,need:1,"null":3,outbound:1,built:[1,3],zero:3,trip:3,latter:3,note:[1,3],also:[1,3],satellit:3,contact:3,build:0,which:[1,3],transmit:3,vaccinenow:1,singl:3,begin:1,distribut:[1,3],track:[1,3],object:1,most:1,beta:1,alpha:1,"class":[1,3],sub:3,tradit:3,don:3,doc:1,clear:1,flow:3,parentsit:1,doe:3,lpo:1,declar:1,pattern:3,custommodel_exampl:1,visitor:3,random:3,threshold:3,label:3,anywai:1,impact:3,access:1,onli:[1,3],explicitli:3,locat:3,acquir:3,figur:[1,3],dispers:3,dict:1,analyz:[1,3],analyt:3,local:[1,3],contribut:3,get:[0,1,3],express:3,epidem:[0,1,3],passeng:[1,3],cannot:1,theta:1,increas:3,requir:[0,1,3],topolog:3,embodi:3,integr:3,contain:[0,1],river:3,where:3,valid:1,set:[0,1,3],andersonrmandmayrmandandersonb1992:3,frame:3,getdegre:1,accord:3,sex:3,see:[1,3],temporarili:3,result:[1,3],sipr:3,simpl:3,sei:3,subject:3,kei:[1,3],heterogen:3,databas:1,tend:3,written:[0,3],between:3,progress:[1,3],awai:1,approach:[0,3],attribut:[1,3],altern:3,assumpt:3,parent:1,entir:3,here:3,distinguish:3,longrightarrow:3,spark:3,measl:3,popul:[1,3],both:1,cov:1,howev:[0,1,3],tempor:3,etc:[1,3],present:3,equat:3,context:3,logic:1,mani:3,overview:0,arriv:[1,3],simstep:1,header:3,diekmannoandheesterbeekjap2000:3,artgraph:3,assum:3,rpo:1,quit:3,invers:3,been:1,trigger:3,besid:[1,3],interest:3,basic:3,grenfel:3,quickli:1,life:3,fire:3,infect:[1,3],suscept:[1,3],ani:[0,1,3],understand:3,togeth:3,finkenstadt:3,those:3,"case":[1,3],determinist:3,multi:3,ident:3,look:1,intruct:1,totpop:1,properti:3,getinedg:1,durat:3,defin:[1,3],calcul:[1,3],abov:[1,3],error:1,aid:3,seipr:3,best:1,demo:1,non:3,cluster:3,siteobj:1,ononononono:[],greater:3,par:1,proport:3,develop:[1,3],welcom:0,receiv:[1,3],suggest:3,make:1,belong:1,intermediari:3,same:1,"while":3,python:[0,1],complex:0,corridor:3,ecolog:3,transit:3,document:[0,1],chickenpox:3,complet:[0,1,3],again:3,optim:3,nest:1,hand:3,covari:3,rais:1,temporari:3,user:[0,1,3],caption:3,implement:[1,3],lower:3,appropri:3,scenario:3,thu:3,well:3,without:3,more:3,autocton:1,thi:[0,1,3],choos:[1,3],undefin:3,epg:1,model:[0,1,3],rout:3,left:3,distanc:1,identifi:3,execut:1,less:3,sninrn:3,rest:1,replenish:3,spread:[1,3],human:3,speed:[1,3],yet:3,languag:1,expos:[1,3],mix:3,had:1,add:1,discret:3,densiti:3,els:1,modtyp:1,take:[1,3],real:1,applic:3,siprp:3,around:1,format:1,big:3,period:3,realiz:[1,3],mon:0,archetyp:3,railroad:3,recurr:3,insert:1,resid:3,like:[0,3],demographi:3,should:[0,3],manual:1,divers:3,api:1,either:3,lose:3,output:1,page:0,right:3,"_transpmodel":3,often:3,epidemiolog:[0,3],some:[1,3],draw:3,self:1,certain:3,born:3,toctre:0,epigrass:[0,1,3],transport:[0,1,3],transmiss:3,scale:3,epis:1,per:[1,3],mathemat:3,condit:3,refer:[1,3],core:3,process:3,immun:3,run:1,power:1,caricatur:3,who:3,step:[1,3],major:3,impos:1,stage:3,chapter:3,about:3,simplest:3,actual:1,vacin:1,getoutedg:1,degre:1,her:1,stand:3,neighbor:1,act:3,road:3,own:1,latent:3,within:[1,3],three:3,"import":[1,3],your:[0,1],inclus:3,wai:[1,3],"_fig":3,"long":1,custom:[0,1,3],avail:3,start:[0,1,3],interfac:0,includ:3,fraction:3,"var":1,"function":[1,3],homogen:3,strategi:3,forc:3,tupl:1,regard:3,surveil:3,jul:0,link:[1,3],ishamvandmedleyg1996:3,delta:[1,3],"true":1,extend:3,notat:1,wise:1,maxstep:1,possibl:[1,3],wish:3,below:3,limit:1,absenc:3,site:[1,3],embed:3,stochast:3,expect:3,featur:[1,3],creat:0,classic:3,scriptabl:0,repres:3,file:[0,1],quantiti:3,intra:1,probabl:[1,3],denot:1,when:[1,3],detail:3,field:3,binomi:3,other:[1,3],spatial:3,you:[0,1,3],realiti:1,node:[0,1,3],stat:1,claus:1,sequenc:3,symbol:3,prepared:3,meaning:1,consid:3,sql:1,pool:3,stai:3,femal:3,sphinx:0,descript:3,visual:3,emerg:3,diagrammat:3,potenti:[1,3],time:[1,3],newli:3,exposur:3},titles:["Welcome to Epigrass’s documentation!","Writing Custom Models","Analysis","Epidemic Models"],modules:{},descrefs:{"":{Graph:[1,1],Site:[1,1]},Graph:{episize:[1,0],maxstep:[1,0],site_list:[1,0],edge_list:[1,0],simstep:[1,0],getSite:[1,2],speed:[1,0]},Site:{getDegree:[1,2],outedges:[1,0],modtype:[1,0],vaccov:[1,0],getNeighbors:[1,2],vaccineNow:[1,0],sitename:[1,0],ts:[1,0],geocode:[1,0],infected:[1,0],inedges:[1,0],vaccinate:[1,2],parentGraph:[1,0],incidence:[1,0],bi:[1,0],edges:[1,0],bp:[1,0],getInEdges:[1,2],totpop:[1,0],getDistanceFromNeighbor:[1,2],vaccination:[1,0],values:[1,0],getOutEdges:[1,2]}},filenames:["index","scripting","analysis","intromodels"]})